O.G. López Ch., A. Santos M., C. Aguilar, D. Quintero A., M.J. Miller. Nuevo registro para Panama de Pelecitus helicinus (Molin, 1860) (Filarioidea: Onchocercidae) como parasito subcutaneo de Arremon aurantiirostris (Passeriformes: Emberizidae). Technociencia. In Press.

M.J. Miller. [Review of] The Birds of Panama: A Field Guide. Wilson Journal of Ornithology 123: 856-858.

M.J. Miller, J.T. Weir, G.R. Angehr, P. Guitton M., E. Bermingham. 2011. An ornithological survey of Piñas Bay, a site on the Pacific coast of Darién Province, Panama. Boletín SAO 20: evAP_3.

M.J. Miller, M. Lelevier, E. Bermingham, J. Klicka, P. Escalante, K. Winker. 2011. Phylogeography of the Rufous-tailed Hummingbird (Amazilia tzacatl). Condor 113: 806–816.

J.C Chaves, A.M. Cuervo, M.J. Miller, C.D. Cadena. 2010. Revising species limits in a group of Myrmeciza antbirds reveals a cryptic species within M. laemosticta. Condor 112: 718–730.

M.J. Miller, E. Bermingham, K. Winker. Neotropical birds show a humped distribution of genetic diversity along a latitudinal transect. 2010. Ecology Letters 13:576-586.

M.J. Miller. 2010. [Review of] The Birds of the Republic of Panama, Part 5. Gazetteer and Bibliography. Wilson Journal of Ornithology 121: 199-200.

S. Woltmann, R.S. Terrill, M.J. Miller, M.L. Brady. Chestnut-backed Antbird (Myrmeciza exsul), Neotropical Birds Online. Ithaca: Cornell Lab of Ornithology.

J.T. Weir, E. Bermingham, M.J. Miller, J. Klicka, M.A. González. 2008. Phylogeography of a morphologically diverse Neotropical montane species, the Common Bush-Tanager Chlorospingus ophthalmicus). Molecular Phylogenetics and Evolution 47: 660-664.

M.J. Miller, E. Bermingham, J. Klicka, P. Escalante, F.S. Raposo do Amaral, J.T. Weir, K. Winker. 2008. Out of Amazonia again and again: episodic crossing of the Andes promotes diversification in a lowland flycatcher. Proceedings of the Royal Society B 275: 1133–1142.

M.J. Miller, E. Bermingham, R.E. Ricklefs. 2007. Historical biogeography of the New World Solitaires Myadestes (Turdidae). Auk 124: 868–885.

F.S. Raposo do Amaral, M.J. Miller, L.F. Silveira, E. Bermingham, A. Wajntal. 2006. Polyphyly of the hawk genera Leucopternis and Buteogallus (Aves, Accipitridae): multiple habitat shifts during the Neotropical buteonine diversification. BMC Evolutionary Biology 6:10.